Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC13.02□□□□□ -0.33
Sox1P53783 Gm27530-201ENSMUST00000184096 98 ntBASIC13.02□□□□□ -0.33
Sox1P53783 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC13.02□□□□□ -0.33
Sox1P53783 Gm18038-201ENSMUST00000197900 485 ntBASIC13.02□□□□□ -0.33
Sox1P53783 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC13.02□□□□□ -0.33
Sox1P53783 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Gm7395-201ENSMUST00000216059 1045 ntBASIC13.02□□□□□ -0.33
Sox1P53783 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC13.02□□□□□ -0.33
Sox1P53783 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.02□□□□□ -0.33
Sox1P53783 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Sox1P53783 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.33
Sox1P53783 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Sox1P53783 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Sox1P53783 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC13.02□□□□□ -0.33
Sox1P53783 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.33
Sox1P53783 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Sox1P53783 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox1P53783 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Gm14219-201ENSMUST00000120414 288 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.01□□□□□ -0.33
Sox1P53783 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.01□□□□□ -0.33
Sox1P53783 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Gm42657-201ENSMUST00000201746 211 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Gm17831-201ENSMUST00000205579 900 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Gm6905-201ENSMUST00000205729 511 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Sox1P53783 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Sox1P53783 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Sox1P53783 AC158355.1-201ENSMUST00000215895 1705 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Gm38102-201ENSMUST00000192791 1935 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Gm44981-201ENSMUST00000205549 1943 ntBASIC13.01□□□□□ -0.33
Sox1P53783 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sox1P53783 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox1P53783 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
Sox1P53783 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC13□□□□□ -0.33
Sox1P53783 Gm12943-201ENSMUST00000119616 210 ntBASIC13□□□□□ -0.33
Sox1P53783 Gm5909-201ENSMUST00000119768 1281 ntBASIC13□□□□□ -0.33
Sox1P53783 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC13□□□□□ -0.33
Sox1P53783 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13□□□□□ -0.33
Sox1P53783 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC13□□□□□ -0.33
Sox1P53783 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox1P53783 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms