Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm25668-201ENSMUST00000157700 129 ntBASIC14.8□□□□□ -0.04
Traf1P39428 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC14.8□□□□□ -0.04
Traf1P39428 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.8□□□□□ -0.04
Traf1P39428 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC14.8□□□□□ -0.04
Traf1P39428 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Traf1P39428 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC14.8□□□□□ -0.04
Traf1P39428 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.8□□□□□ -0.04
Traf1P39428 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC14.8□□□□□ -0.04
Traf1P39428 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC14.8□□□□□ -0.04
Traf1P39428 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Traf1P39428 Gm8228-201ENSMUST00000189949 2192 ntBASIC14.8□□□□□ -0.04
Traf1P39428 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Traf1P39428 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Traf1P39428 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC14.79□□□□□ -0.04
Traf1P39428 Gm22323-201ENSMUST00000103832 109 ntBASIC14.79□□□□□ -0.04
Traf1P39428 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Traf1P39428 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC14.79□□□□□ -0.04
Traf1P39428 Gm13316-201ENSMUST00000140537 691 ntBASIC14.79□□□□□ -0.04
Traf1P39428 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Traf1P39428 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Gm26083-201ENSMUST00000157904 193 ntBASIC14.79□□□□□ -0.04
Traf1P39428 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Gm26956-201ENSMUST00000182176 986 ntBASIC14.79□□□□□ -0.04
Traf1P39428 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC14.79□□□□□ -0.04
Traf1P39428 Gm42706-201ENSMUST00000199733 1910 ntBASIC14.79□□□□□ -0.04
Traf1P39428 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.79□□□□□ -0.04
Traf1P39428 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.79□□□□□ -0.04
Traf1P39428 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Traf1P39428 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC14.79□□□□□ -0.04
Traf1P39428 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Traf1P39428 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC14.79□□□□□ -0.04
Traf1P39428 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.79□□□□□ -0.04
Traf1P39428 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC14.78□□□□□ -0.04
Traf1P39428 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Gm37259-201ENSMUST00000193903 849 ntBASIC14.78□□□□□ -0.04
Traf1P39428 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Traf1P39428 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Traf1P39428 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Traf1P39428 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Traf1P39428 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms