Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm42498-201ENSMUST00000199981 1372 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Sdc1P18828 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC10.44□□□□□ -0.74
Sdc1P18828 Gm15460-201ENSMUST00000118147 391 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC10.44□□□□□ -0.74
Sdc1P18828 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC10.44□□□□□ -0.74
Sdc1P18828 Gm8116-201ENSMUST00000182917 1201 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 AC153872.1-201ENSMUST00000199539 128 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Dupd1-202ENSMUST00000224735 548 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC10.44□□□□□ -0.74
Sdc1P18828 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Sdc1P18828 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Gm26684-202ENSMUST00000228229 8257 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC10.44□□□□□ -0.74
Sdc1P18828 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Gm42463-201ENSMUST00000198041 4886 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
Sdc1P18828 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC10.43□□□□□ -0.74
Sdc1P18828 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC10.43□□□□□ -0.74
Sdc1P18828 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Gm4804-201ENSMUST00000182234 999 ntBASIC10.43□□□□□ -0.74
Sdc1P18828 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC10.43□□□□□ -0.74
Sdc1P18828 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 AC161829.1-201ENSMUST00000220298 281 ntBASIC10.43□□□□□ -0.74
Sdc1P18828 AC156016.3-201ENSMUST00000228623 344 ntBASIC10.43□□□□□ -0.74
Sdc1P18828 AC154276.1-201ENSMUST00000228874 1299 ntBASIC10.43□□□□□ -0.74
Sdc1P18828 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC10.43□□□□□ -0.74
Sdc1P18828 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Sdc1P18828 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
Sdc1P18828 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Sdc1P18828 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
Sdc1P18828 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
Sdc1P18828 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC10.42□□□□□ -0.74
Sdc1P18828 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms