Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Cdx1P18111 AC153506.1-201ENSMUST00000218768 2915 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Gm22189-201ENSMUST00000103822 86 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
Cdx1P18111 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC10.36□□□□□ -0.75
Cdx1P18111 AA619741-201ENSMUST00000195095 646 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Gm43433-201ENSMUST00000196573 481 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Gm18018-201ENSMUST00000198273 408 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Olfr286-202ENSMUST00000205305 969 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 AC149588.3-201ENSMUST00000227515 150 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Cdx1P18111 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Cdx1P18111 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Cdx1P18111 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC10.36□□□□□ -0.75
Cdx1P18111 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
Cdx1P18111 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Cdx1P18111 Gm45266-201ENSMUST00000210111 2173 ntBASIC10.36□□□□□ -0.75
Cdx1P18111 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC10.36□□□□□ -0.75
Cdx1P18111 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Il33-202ENSMUST00000120388 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Gm10686-201ENSMUST00000215389 3247 ntBASIC10.35□□□□□ -0.75
Cdx1P18111 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Cdx1P18111 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Cdx1P18111 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC10.35□□□□□ -0.75
Cdx1P18111 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Gm11478-201ENSMUST00000117851 599 ntBASIC10.35□□□□□ -0.75
Cdx1P18111 Gm7820-201ENSMUST00000121012 1052 ntBASIC10.35□□□□□ -0.75
Cdx1P18111 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC10.35□□□□□ -0.75
Cdx1P18111 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC10.35□□□□□ -0.75
Cdx1P18111 AC121804.3-201ENSMUST00000223420 295 ntBASIC10.35□□□□□ -0.75
Cdx1P18111 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Gm15823-201ENSMUST00000064305 670 ntBASIC10.35□□□□□ -0.75
Cdx1P18111 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
Cdx1P18111 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC10.35□□□□□ -0.75
Cdx1P18111 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Cdx1P18111 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Cdx1P18111 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC10.34□□□□□ -0.75
Cdx1P18111 AC123834.1-201ENSMUST00000225346 2043 ntBASIC10.34□□□□□ -0.75
Cdx1P18111 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdx1P18111 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdx1P18111 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Cdx1P18111 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC10.34□□□□□ -0.75
Cdx1P18111 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Gm42943-201ENSMUST00000199676 3242 ntBASIC10.34□□□□□ -0.75
Cdx1P18111 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Cdx1P18111 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms