Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Lire1P11260 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.19□□□□□ -0.46
Lire1P11260 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.19□□□□□ -0.46
Lire1P11260 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12.19□□□□□ -0.46
Lire1P11260 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.19□□□□□ -0.46
Lire1P11260 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.19□□□□□ -0.46
Lire1P11260 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.19□□□□□ -0.46
Lire1P11260 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 AC131068.2-201ENSMUST00000226175 1453 ntBASIC12.19□□□□□ -0.46
Lire1P11260 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Lire1P11260 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Olfr464-205ENSMUST00000217112 2232 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Gm12957-201ENSMUST00000117835 377 ntBASIC12.18□□□□□ -0.46
Lire1P11260 Gm13226-201ENSMUST00000117838 404 ntBASIC12.18□□□□□ -0.46
Lire1P11260 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.18□□□□□ -0.46
Lire1P11260 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Gm7287-201ENSMUST00000205267 602 ntBASIC12.18□□□□□ -0.46
Lire1P11260 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Lire1P11260 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.18□□□□□ -0.46
Lire1P11260 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Lire1P11260 Gm10548-201ENSMUST00000097631 2629 ntBASIC12.18□□□□□ -0.46
Lire1P11260 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.18□□□□□ -0.46
Lire1P11260 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Lire1P11260 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.17□□□□□ -0.46
Lire1P11260 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC12.17□□□□□ -0.46
Lire1P11260 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Lire1P11260 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Lire1P11260 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.17□□□□□ -0.46
Lire1P11260 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC12.17□□□□□ -0.46
Lire1P11260 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.17□□□□□ -0.46
Lire1P11260 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.17□□□□□ -0.46
Lire1P11260 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Lire1P11260 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.17□□□□□ -0.46
Lire1P11260 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
Lire1P11260 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 161.1 ms