Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Atp9b-201ENSMUST00000091790 5357 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Chd2-203ENSMUST00000169922 9085 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
Hmgb3O54879 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Gm14494-201ENSMUST00000118786 435 ntBASIC10.55□□□□□ -0.72
Hmgb3O54879 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC10.55□□□□□ -0.72
Hmgb3O54879 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC10.55□□□□□ -0.72
Hmgb3O54879 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC10.55□□□□□ -0.72
Hmgb3O54879 Gm4804-201ENSMUST00000182234 999 ntBASIC10.55□□□□□ -0.72
Hmgb3O54879 Gm27494-201ENSMUST00000184735 189 ntBASIC10.55□□□□□ -0.72
Hmgb3O54879 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC10.55□□□□□ -0.72
Hmgb3O54879 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Olfr130-202ENSMUST00000215726 5810 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Hmgb3O54879 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Gm2238-201ENSMUST00000192074 3669 ntBASIC10.55□□□□□ -0.72
Hmgb3O54879 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC10.55□□□□□ -0.72
Hmgb3O54879 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hmgb3O54879 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC10.55□□□□□ -0.72
Hmgb3O54879 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Pde5a-201ENSMUST00000066728 6939 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm28635-201ENSMUST00000189772 4734 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm19931-201ENSMUST00000198920 368 ntBASIC10.54□□□□□ -0.72
Hmgb3O54879 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Shd-206ENSMUST00000225145 998 ntBASIC10.54□□□□□ -0.72
Hmgb3O54879 AC156016.3-201ENSMUST00000228623 344 ntBASIC10.54□□□□□ -0.72
Hmgb3O54879 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm10175-201ENSMUST00000086013 645 ntBASIC10.54□□□□□ -0.72
Hmgb3O54879 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Slc6a2-201ENSMUST00000072939 6187 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC10.54□□□□□ -0.72
Hmgb3O54879 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC10.54□□□□□ -0.72
Hmgb3O54879 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Rest-201ENSMUST00000080359 7004 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hmgb3O54879 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC10.54□□□□□ -0.72
Hmgb3O54879 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Hmgb3O54879 AC161252.3-201ENSMUST00000225465 1549 ntBASIC10.53□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 185.2 ms