Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gm29649-201ENSMUST00000185649 419 ntBASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gm42929-201ENSMUST00000198374 1286 ntBASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gm18062-201ENSMUST00000208020 547 ntBASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gm18055-201ENSMUST00000208254 547 ntBASIC12.08□□□□□ -0.48
Trim3Q9R1R2 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Paupar-201ENSMUST00000194826 3482 ntBASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm5385-201ENSMUST00000118988 1559 ntBASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm8810-201ENSMUST00000172895 754 ntBASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 AC173210.1-201ENSMUST00000222341 1131 ntBASIC12.07□□□□□ -0.48
Trim3Q9R1R2 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim3Q9R1R2 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm11425-201ENSMUST00000119608 498 ntBASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm24644-201ENSMUST00000157114 139 ntBASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.06□□□□□ -0.48
Trim3Q9R1R2 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm29127-201ENSMUST00000188304 517 ntBASIC12.06□□□□□ -0.48
Trim3Q9R1R2 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm9396-201ENSMUST00000076703 567 ntBASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms