Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Gm8801-201ENSMUST00000173255 1064 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Gm6013-201ENSMUST00000212264 699 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 CU024892.2-201ENSMUST00000224608 832 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 AC154171.1-201ENSMUST00000224610 643 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Gm12846-201ENSMUST00000120431 1373 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Gm18222-201ENSMUST00000202416 1387 ntBASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup88Q8CEC0 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Gm42929-201ENSMUST00000198374 1286 ntBASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Gm2824-203ENSMUST00000226189 1228 ntBASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nup88Q8CEC0 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gm1335-201ENSMUST00000121653 386 ntBASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gm19184-201ENSMUST00000196798 928 ntBASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nup88Q8CEC0 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms