Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 AC122197.2-201ENSMUST00000219196 1635 ntBASIC17.5■□□□□ 0.39
Usp40Q8BWR4 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm5846-201ENSMUST00000193146 1414 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm12015-201ENSMUST00000117065 843 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm7857-201ENSMUST00000117957 358 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm12217-201ENSMUST00000118858 696 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Mir5120-201ENSMUST00000175020 78 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm8494-201ENSMUST00000178171 1233 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm42937-201ENSMUST00000197360 752 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm18753-201ENSMUST00000201000 566 ntBASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp40Q8BWR4 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Ighv5-7-201ENSMUST00000192302 244 ntBASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp40Q8BWR4 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Gm13394-201ENSMUST00000121658 1000 ntBASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Gm7003-201ENSMUST00000195089 312 ntBASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Rprl1-202ENSMUST00000198476 238 ntBASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Gm8913-201ENSMUST00000209491 641 ntBASIC17.47■□□□□ 0.39
Usp40Q8BWR4 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usp40Q8BWR4 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp40Q8BWR4 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms