Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ptchd3Q0EEE2 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ptchd3Q0EEE2 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ptchd3Q0EEE2 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ptchd3Q0EEE2 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ptchd3Q0EEE2 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ptchd3Q0EEE2 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gm5866-201ENSMUST00000177881 973 ntBASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gm5161-201ENSMUST00000075243 853 ntBASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ptchd3Q0EEE2 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm7488-201ENSMUST00000117148 684 ntBASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm12859-201ENSMUST00000117834 427 ntBASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Gm24447-201ENSMUST00000083977 338 ntBASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ptchd3Q0EEE2 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ptchd3Q0EEE2 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ptchd3Q0EEE2 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.34□□□□□ -0.43
Ptchd3Q0EEE2 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ptchd3Q0EEE2 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ptchd3Q0EEE2 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ptchd3Q0EEE2 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 74.2 ms