Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Gm13996-201ENSMUST00000118456 430 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Gm2445-201ENSMUST00000182798 989 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 Gm19891-201ENSMUST00000189771 303 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 Gm44651-201ENSMUST00000207343 372 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 Gm18393-201ENSMUST00000208349 1131 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 Gm8913-201ENSMUST00000209491 641 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC10.92□□□□□ -0.66
Col8a1Q00780 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Gm9062-201ENSMUST00000117712 727 ntBASIC10.92□□□□□ -0.66
Col8a1Q00780 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Gm24749-201ENSMUST00000157838 343 ntBASIC10.92□□□□□ -0.66
Col8a1Q00780 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Gm44551-201ENSMUST00000208804 171 ntBASIC10.92□□□□□ -0.66
Col8a1Q00780 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 AC126444.1-201ENSMUST00000225938 1768 ntBASIC10.92□□□□□ -0.66
Col8a1Q00780 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col8a1Q00780 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC10.92□□□□□ -0.66
Col8a1Q00780 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm7899-201ENSMUST00000192935 1897 ntBASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Col8a1Q00780 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC10.91□□□□□ -0.66
Col8a1Q00780 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col8a1Q00780 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm6335-201ENSMUST00000118081 1194 ntBASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm12286-201ENSMUST00000119246 1002 ntBASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm7816-201ENSMUST00000119884 1194 ntBASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm15542-201ENSMUST00000121585 1194 ntBASIC10.91□□□□□ -0.66
Col8a1Q00780 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC10.91□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms