Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdh11P55288 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC11.69□□□□□ -0.54
Cdh11P55288 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Cdh11P55288 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdh11P55288 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cdh11P55288 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdh11P55288 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdh11P55288 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.68□□□□□ -0.54
Cdh11P55288 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm19931-201ENSMUST00000198920 368 ntBASIC11.68□□□□□ -0.54
Cdh11P55288 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm7067-201ENSMUST00000207698 1249 ntBASIC11.68□□□□□ -0.54
Cdh11P55288 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm6983-201ENSMUST00000214912 628 ntBASIC11.68□□□□□ -0.54
Cdh11P55288 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm43417-201ENSMUST00000201586 5207 ntBASIC11.68□□□□□ -0.54
Cdh11P55288 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm5422-201ENSMUST00000050717 2721 ntBASIC11.68□□□□□ -0.54
Cdh11P55288 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.68□□□□□ -0.54
Cdh11P55288 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm5912-201ENSMUST00000122282 1438 ntBASIC11.68□□□□□ -0.54
Cdh11P55288 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC11.68□□□□□ -0.54
Cdh11P55288 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Cdh11P55288 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdh11P55288 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm13689-201ENSMUST00000119360 685 ntBASIC11.67□□□□□ -0.54
Cdh11P55288 Gm16342-201ENSMUST00000124025 1025 ntBASIC11.67□□□□□ -0.54
Cdh11P55288 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm38223-201ENSMUST00000194484 695 ntBASIC11.67□□□□□ -0.54
Cdh11P55288 Gm5276-201ENSMUST00000196683 1047 ntBASIC11.67□□□□□ -0.54
Cdh11P55288 Gm8463-201ENSMUST00000208573 613 ntBASIC11.67□□□□□ -0.54
Cdh11P55288 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC11.67□□□□□ -0.54
Cdh11P55288 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC11.67□□□□□ -0.54
Cdh11P55288 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.67□□□□□ -0.54
Cdh11P55288 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdh11P55288 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms