Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rfx1P48377 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rfx1P48377 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rfx1P48377 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Rfx1P48377 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC15.27■□□□□ 0.04
Rfx1P48377 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Rfx1P48377 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Gm37324-201ENSMUST00000194500 4504 ntBASIC15.27■□□□□ 0.04
Rfx1P48377 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Rfx1P48377 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Gm2420-201ENSMUST00000119864 2149 ntBASIC15.27■□□□□ 0.04
Rfx1P48377 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC15.27■□□□□ 0.04
Rfx1P48377 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Rfx1P48377 AC155258.1-201ENSMUST00000219303 253 ntBASIC15.27■□□□□ 0.04
Rfx1P48377 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC15.27■□□□□ 0.04
Rfx1P48377 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rfx1P48377 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Rfx1P48377 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Rfx1P48377 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Rfx1P48377 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC15.27■□□□□ 0.03
Rfx1P48377 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Rfx1P48377 AC164107.1-201ENSMUST00000227730 2161 ntBASIC15.26■□□□□ 0.03
Rfx1P48377 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Rfx1P48377 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Mir686-201ENSMUST00000102174 109 ntBASIC15.26■□□□□ 0.03
Rfx1P48377 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.26■□□□□ 0.03
Rfx1P48377 Gm5638-201ENSMUST00000118618 1258 ntBASIC15.26■□□□□ 0.03
Rfx1P48377 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.26■□□□□ 0.03
Rfx1P48377 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Rfx1P48377 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Gm31326-201ENSMUST00000191856 1048 ntBASIC15.26■□□□□ 0.03
Rfx1P48377 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.26■□□□□ 0.03
Rfx1P48377 Gm45484-201ENSMUST00000210310 1141 ntBASIC15.26■□□□□ 0.03
Rfx1P48377 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Ptprm-203ENSMUST00000224091 3773 ntBASIC15.26■□□□□ 0.03
Rfx1P48377 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.26■□□□□ 0.03
Rfx1P48377 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rfx1P48377 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Gm37648-201ENSMUST00000192072 2563 ntBASIC15.25■□□□□ 0.03
Rfx1P48377 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC15.25■□□□□ 0.03
Rfx1P48377 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Gm38223-201ENSMUST00000194484 695 ntBASIC15.25■□□□□ 0.03
Rfx1P48377 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC15.25■□□□□ 0.03
Rfx1P48377 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC15.25■□□□□ 0.03
Rfx1P48377 AC154305.4-201ENSMUST00000224520 614 ntBASIC15.25■□□□□ 0.03
Rfx1P48377 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms