Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Traf1P39428 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Gm24255-201ENSMUST00000104481 128 ntBASIC14.82□□□□□ -0.04
Traf1P39428 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Traf1P39428 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Traf1P39428 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 AC132317.1-201ENSMUST00000227227 962 ntBASIC14.82□□□□□ -0.04
Traf1P39428 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Traf1P39428 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC14.82□□□□□ -0.04
Traf1P39428 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.82□□□□□ -0.04
Traf1P39428 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Traf1P39428 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.82□□□□□ -0.04
Traf1P39428 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Traf1P39428 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Traf1P39428 Gm9025-201ENSMUST00000122415 1575 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Traf1P39428 AC113060.1-201ENSMUST00000225689 1573 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Traf1P39428 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC14.81□□□□□ -0.04
Traf1P39428 Gm20482-202ENSMUST00000174729 825 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Gm27243-201ENSMUST00000183964 521 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Gm7895-201ENSMUST00000187459 1173 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 AC166051.1-201ENSMUST00000214313 210 ntBASIC14.81□□□□□ -0.04
Traf1P39428 CT025533.2-201ENSMUST00000228715 1248 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Traf1P39428 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Traf1P39428 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Traf1P39428 Gm24526-201ENSMUST00000082921 158 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Traf1P39428 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Traf1P39428 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Ntrk2-204ENSMUST00000224259 3049 ntBASIC14.81□□□□□ -0.04
Traf1P39428 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Traf1P39428 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC14.81□□□□□ -0.04
Traf1P39428 Gm6992-201ENSMUST00000217973 1607 ntBASIC14.81□□□□□ -0.04
Traf1P39428 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
Traf1P39428 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Traf1P39428 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Gm45053-201ENSMUST00000206112 2499 ntBASIC14.8□□□□□ -0.04
Traf1P39428 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.8□□□□□ -0.04
Traf1P39428 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Traf1P39428 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms