Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Gm6254-201ENSMUST00000168178 1072 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Proscos-202ENSMUST00000178990 666 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Gm6091-201ENSMUST00000098307 165 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trim3Q9R1R2 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm8213-201ENSMUST00000118191 441 ntBASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm6447-201ENSMUST00000118905 835 ntBASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm11803-201ENSMUST00000119966 444 ntBASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm10156-201ENSMUST00000122364 462 ntBASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Trim3Q9R1R2 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Trim3Q9R1R2 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Trim3Q9R1R2 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Trim3Q9R1R2 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.47
Trim3Q9R1R2 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.08□□□□□ -0.47
Trim3Q9R1R2 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Trim3Q9R1R2 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim3Q9R1R2 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms