Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm18187-201ENSMUST00000196476 984 ntBASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 AC132467.2-202ENSMUST00000227726 559 ntBASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gm6091-201ENSMUST00000098307 165 ntBASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 AC101945.2-201ENSMUST00000227886 1377 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm12203-201ENSMUST00000118235 598 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm12209-201ENSMUST00000120089 596 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 4931428L18Rik-202ENSMUST00000135245 889 ntAPPRIS P5 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm37497-201ENSMUST00000195830 798 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Gm9025-201ENSMUST00000122415 1575 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 AC113060.1-201ENSMUST00000225689 1573 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 AC241621.2-201ENSMUST00000223991 2151 ntBASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Prpf40aQ9R1C7 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Prpf40aQ9R1C7 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.11□□□□□ -0.15
Prpf40aQ9R1C7 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Prpf40aQ9R1C7 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Prpf40aQ9R1C7 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms