Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
Trim54Q9ERP3 Gm8862-201ENSMUST00000198379 1346 ntBASIC13.9□□□□□ -0.19
Trim54Q9ERP3 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm23270-201ENSMUST00000104055 131 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm12997-201ENSMUST00000120207 640 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm23363-201ENSMUST00000175024 79 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm38092-201ENSMUST00000195600 653 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm22058-201ENSMUST00000083393 310 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Daam2-202ENSMUST00000224595 1926 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Gm4366-201ENSMUST00000201488 1342 ntBASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim54Q9ERP3 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm25214-201ENSMUST00000104573 129 ntBASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm13875-201ENSMUST00000120162 282 ntBASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim54Q9ERP3 Gm6198-201ENSMUST00000191337 2929 ntBASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Gm37827-201ENSMUST00000194486 1542 ntBASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim54Q9ERP3 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms