Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Gm2423-201ENSMUST00000074863 733 ntBASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lima1Q9ERG0 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lima1Q9ERG0 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Lima1Q9ERG0 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
Lima1Q9ERG0 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
Lima1Q9ERG0 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Lima1Q9ERG0 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms