Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC10.95□□□□□ -0.66
Col8a1Q00780 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm8908-201ENSMUST00000121633 1024 ntBASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm6407-201ENSMUST00000176468 549 ntBASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC10.95□□□□□ -0.66
Col8a1Q00780 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm6458-201ENSMUST00000211573 635 ntBASIC10.95□□□□□ -0.66
Col8a1Q00780 AC154276.3-201ENSMUST00000227643 998 ntBASIC10.95□□□□□ -0.66
Col8a1Q00780 AC123665.1-201ENSMUST00000228204 438 ntBASIC10.95□□□□□ -0.66
Col8a1Q00780 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm12020-201ENSMUST00000119030 2042 ntBASIC10.95□□□□□ -0.66
Col8a1Q00780 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gm42872-201ENSMUST00000200026 1967 ntBASIC10.95□□□□□ -0.66
Col8a1Q00780 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
Col8a1Q00780 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm38102-201ENSMUST00000192791 1935 ntBASIC10.94□□□□□ -0.66
Col8a1Q00780 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Col8a1Q00780 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm11667-201ENSMUST00000119828 486 ntBASIC10.94□□□□□ -0.66
Col8a1Q00780 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Col8a1Q00780 Mir6958-201ENSMUST00000184207 73 ntBASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm5904-201ENSMUST00000210286 865 ntBASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm9004-201ENSMUST00000218739 1222 ntBASIC10.94□□□□□ -0.66
Col8a1Q00780 Gm8712-201ENSMUST00000221090 701 ntBASIC10.94□□□□□ -0.66
Col8a1Q00780 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC10.94□□□□□ -0.66
Col8a1Q00780 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Col8a1Q00780 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Col8a1Q00780 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 AC096628.2-201ENSMUST00000225443 1413 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC10.93□□□□□ -0.66
Col8a1Q00780 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC10.93□□□□□ -0.66
Col8a1Q00780 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Col8a1Q00780 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms