Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 AC171277.1-201ENSMUST00000216902 1441 ntBASIC19.38■□□□□ 0.69
Cux1P53564 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Cux1P53564 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Cux1P53564 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Cux1P53564 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Cux1P53564 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Cux1P53564 Mup-ps26-201ENSMUST00000121751 202 ntBASIC19.38■□□□□ 0.69
Cux1P53564 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Gm45219-201ENSMUST00000205602 465 ntBASIC19.38■□□□□ 0.69
Cux1P53564 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
Cux1P53564 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Gm9785-201ENSMUST00000062642 1006 ntBASIC19.38■□□□□ 0.69
Cux1P53564 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC19.38■□□□□ 0.69
Cux1P53564 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Cux1P53564 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Gm38058-201ENSMUST00000194323 4368 ntBASIC19.37■□□□□ 0.69
Cux1P53564 Cd63-ps-202ENSMUST00000154992 717 ntBASIC19.37■□□□□ 0.69
Cux1P53564 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Cux1P53564 Gm37246-201ENSMUST00000192665 835 ntBASIC19.37■□□□□ 0.69
Cux1P53564 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC19.37■□□□□ 0.69
Cux1P53564 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC19.37■□□□□ 0.69
Cux1P53564 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC19.37■□□□□ 0.69
Cux1P53564 AC129219.2-201ENSMUST00000224324 701 ntBASIC19.37■□□□□ 0.69
Cux1P53564 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Cux1P53564 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Cux1P53564 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Cux1P53564 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cux1P53564 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Cux1P53564 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC19.37■□□□□ 0.69
Cux1P53564 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Cux1P53564 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Gm12164-201ENSMUST00000121695 551 ntBASIC19.36■□□□□ 0.69
Cux1P53564 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC19.36■□□□□ 0.69
Cux1P53564 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Cux1P53564 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC19.36■□□□□ 0.69
Cux1P53564 Gm10731-201ENSMUST00000181171 448 ntBASIC19.36■□□□□ 0.69
Cux1P53564 Gm5733-201ENSMUST00000190232 939 ntBASIC19.36■□□□□ 0.69
Cux1P53564 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
Cux1P53564 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC19.36■□□□□ 0.69
Cux1P53564 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Cux1P53564 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Cux1P53564 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Cux1P53564 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC19.36■□□□□ 0.69
Cux1P53564 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cux1P53564 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC19.35■□□□□ 0.69
Cux1P53564 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC19.35■□□□□ 0.69
Cux1P53564 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
Cux1P53564 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Cux1P53564 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Cux1P53564 AC151895.1-201ENSMUST00000219025 1742 ntBASIC19.35■□□□□ 0.69
Cux1P53564 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms