Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC11.61□□□□□ -0.55
Rfx3P48381 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11.61□□□□□ -0.55
Rfx3P48381 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Rfx3P48381 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Rfx3P48381 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Rfx3P48381 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
Rfx3P48381 Paupar-201ENSMUST00000194826 3482 ntBASIC11.6□□□□□ -0.55
Rfx3P48381 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC11.6□□□□□ -0.55
Rfx3P48381 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
Rfx3P48381 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Rfx3P48381 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Rfx3P48381 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Rfx3P48381 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC11.6□□□□□ -0.55
Rfx3P48381 Gm7446-201ENSMUST00000221035 1240 ntBASIC11.6□□□□□ -0.55
Rfx3P48381 Itm2b-204ENSMUST00000228637 783 ntBASIC11.6□□□□□ -0.55
Rfx3P48381 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.6□□□□□ -0.55
Rfx3P48381 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Rfx3P48381 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Rfx3P48381 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC11.6□□□□□ -0.55
Rfx3P48381 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC11.59□□□□□ -0.55
Rfx3P48381 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Rfx3P48381 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC11.59□□□□□ -0.55
Rfx3P48381 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Rfx3P48381 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC11.59□□□□□ -0.55
Rfx3P48381 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
Rfx3P48381 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Rfx3P48381 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Rfx3P48381 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Rfx3P48381 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Rfx3P48381 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Rfx3P48381 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC11.58□□□□□ -0.56
Rfx3P48381 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Rfx3P48381 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Rfx3P48381 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
Rfx3P48381 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.58□□□□□ -0.56
Rfx3P48381 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Rfx3P48381 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Rfx3P48381 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms