Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 AC122197.2-201ENSMUST00000219196 1635 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Cdx2P43241 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
Cdx2P43241 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12015-201ENSMUST00000117065 843 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.16□□□□□ -0.46
Cdx2P43241 Gm13611-201ENSMUST00000118269 318 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12616-201ENSMUST00000118594 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12266-201ENSMUST00000120311 962 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Cdx2P43241 Gm17040-202ENSMUST00000170597 889 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12624-201ENSMUST00000177615 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12621-201ENSMUST00000177760 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12615-201ENSMUST00000177970 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12622-201ENSMUST00000177975 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12627-201ENSMUST00000178412 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12625-201ENSMUST00000179122 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12614-201ENSMUST00000179586 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm12613-201ENSMUST00000180323 382 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm28882-201ENSMUST00000185504 314 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC12.16□□□□□ -0.46
Cdx2P43241 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC12.16□□□□□ -0.46
Cdx2P43241 AC107638.1-201ENSMUST00000213690 1061 ntBASIC12.16□□□□□ -0.46
Cdx2P43241 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Cdx2P43241 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdx2P43241 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cdx2P43241 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC12.15□□□□□ -0.46
Cdx2P43241 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC12.15□□□□□ -0.46
Cdx2P43241 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC12.15□□□□□ -0.46
Cdx2P43241 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC12.15□□□□□ -0.46
Cdx2P43241 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Cdx2P43241 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Gm9826-201ENSMUST00000029124 1299 ntBASIC12.15□□□□□ -0.46
Cdx2P43241 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Cdx2P43241 Gm2420-202ENSMUST00000202224 2249 ntBASIC12.15□□□□□ -0.46
Cdx2P43241 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdx2P43241 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdx2P43241 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
Cdx2P43241 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdx2P43241 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
Cdx2P43241 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC12.14□□□□□ -0.47
Cdx2P43241 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Cdx2P43241 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdx2P43241 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Cdx2P43241 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Cdx2P43241 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Cdx2P43241 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC12.14□□□□□ -0.47
Cdx2P43241 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
Cdx2P43241 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.14□□□□□ -0.47
Cdx2P43241 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms