Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.85□□□□□ -0.03
Traf1P39428 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Traf1P39428 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Gm14921-201ENSMUST00000118643 908 ntBASIC14.85□□□□□ -0.03
Traf1P39428 Gm11964-201ENSMUST00000120982 444 ntBASIC14.85□□□□□ -0.03
Traf1P39428 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Gm7584-201ENSMUST00000175829 940 ntBASIC14.85□□□□□ -0.03
Traf1P39428 Gm27320-201ENSMUST00000184892 109 ntBASIC14.85□□□□□ -0.03
Traf1P39428 Gm6621-201ENSMUST00000193251 772 ntBASIC14.85□□□□□ -0.03
Traf1P39428 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 Gm45706-201ENSMUST00000213063 2136 ntBASIC14.85□□□□□ -0.03
Traf1P39428 CT009713.10-202ENSMUST00000225734 696 ntBASIC14.85□□□□□ -0.03
Traf1P39428 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Traf1P39428 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.85□□□□□ -0.03
Traf1P39428 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Traf1P39428 Gm3756-201ENSMUST00000169182 1355 ntBASIC14.85□□□□□ -0.03
Traf1P39428 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
Traf1P39428 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC14.84□□□□□ -0.03
Traf1P39428 Gm12291-201ENSMUST00000121627 311 ntBASIC14.84□□□□□ -0.03
Traf1P39428 Gm6334-201ENSMUST00000207083 228 ntBASIC14.84□□□□□ -0.03
Traf1P39428 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Traf1P39428 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Traf1P39428 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Traf1P39428 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC14.84□□□□□ -0.03
Traf1P39428 CT009713.10-201ENSMUST00000225013 1986 ntBASIC14.84□□□□□ -0.03
Traf1P39428 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.83□□□□□ -0.03
Traf1P39428 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Traf1P39428 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Traf1P39428 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Traf1P39428 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Traf1P39428 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Traf1P39428 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Traf1P39428 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.83□□□□□ -0.04
Traf1P39428 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Traf1P39428 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC14.83□□□□□ -0.04
Traf1P39428 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.83□□□□□ -0.04
Traf1P39428 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Traf1P39428 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Traf1P39428 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.04
Traf1P39428 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Traf1P39428 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Traf1P39428 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.83□□□□□ -0.04
Traf1P39428 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC14.83□□□□□ -0.04
Traf1P39428 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Traf1P39428 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms