Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC10.4□□□□□ -0.74
Cdx1P18111 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Cdx1P18111 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC10.4□□□□□ -0.74
Cdx1P18111 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Cdx1P18111 Gm8515-201ENSMUST00000194852 576 ntBASIC10.4□□□□□ -0.74
Cdx1P18111 Gm45484-201ENSMUST00000210310 1141 ntBASIC10.4□□□□□ -0.74
Cdx1P18111 Gm45453-201ENSMUST00000211758 853 ntBASIC10.4□□□□□ -0.74
Cdx1P18111 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Cdx1P18111 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC10.4□□□□□ -0.74
Cdx1P18111 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdx1P18111 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Cdx1P18111 Gm37324-201ENSMUST00000194500 4504 ntBASIC10.4□□□□□ -0.75
Cdx1P18111 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Cdx1P18111 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.75
Cdx1P18111 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Cdx1P18111 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Cdx1P18111 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC10.4□□□□□ -0.75
Cdx1P18111 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Cdx1P18111 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Cdx1P18111 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC10.39□□□□□ -0.75
Cdx1P18111 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Gm44401-201ENSMUST00000204462 2375 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 AC131586.1-201ENSMUST00000228844 2964 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Cdx1P18111 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC10.39□□□□□ -0.75
Cdx1P18111 Gm4691-201ENSMUST00000182339 1000 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Gm43703-201ENSMUST00000200523 763 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Gm6218-201ENSMUST00000219812 628 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Gm9229-201ENSMUST00000222777 126 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Gm43174-201ENSMUST00000195914 2445 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdx1P18111 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC10.39□□□□□ -0.75
Cdx1P18111 Gm28719-201ENSMUST00000187779 1757 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC10.39□□□□□ -0.75
Cdx1P18111 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdx1P18111 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 CT025681.1-201ENSMUST00000225453 1855 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 Gm6263-201ENSMUST00000120029 1342 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms