Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RaraP11416 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
RaraP11416 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
RaraP11416 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
RaraP11416 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RaraP11416 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Gm13123-201ENSMUST00000122173 492 ntBASIC13.85□□□□□ -0.19
RaraP11416 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC13.85□□□□□ -0.19
RaraP11416 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Gm28911-201ENSMUST00000188837 117 ntBASIC13.85□□□□□ -0.19
RaraP11416 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC13.85□□□□□ -0.19
RaraP11416 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC13.85□□□□□ -0.19
RaraP11416 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.85□□□□□ -0.19
RaraP11416 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
RaraP11416 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Mir339-201ENSMUST00000083659 96 ntBASIC13.85□□□□□ -0.19
RaraP11416 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RaraP11416 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.85□□□□□ -0.19
RaraP11416 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Gm43858-201ENSMUST00000199418 1778 ntBASIC13.85□□□□□ -0.19
RaraP11416 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.85□□□□□ -0.19
RaraP11416 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
RaraP11416 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RaraP11416 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
RaraP11416 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
RaraP11416 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 Gm11618-201ENSMUST00000117946 267 ntBASIC13.84□□□□□ -0.19
RaraP11416 Gm13612-201ENSMUST00000119276 390 ntBASIC13.84□□□□□ -0.19
RaraP11416 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC13.84□□□□□ -0.19
RaraP11416 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Proscos-202ENSMUST00000178990 666 ntBASIC13.84□□□□□ -0.19
RaraP11416 Gm27701-201ENSMUST00000184498 110 ntBASIC13.84□□□□□ -0.19
RaraP11416 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
RaraP11416 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13.84□□□□□ -0.19
RaraP11416 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.84□□□□□ -0.19
RaraP11416 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
RaraP11416 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
RaraP11416 Gm38049-201ENSMUST00000195698 1372 ntBASIC13.83□□□□□ -0.19
RaraP11416 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RaraP11416 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RaraP11416 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RaraP11416 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RaraP11416 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RaraP11416 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RaraP11416 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.83□□□□□ -0.2
RaraP11416 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC13.83□□□□□ -0.2
RaraP11416 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
RaraP11416 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
RaraP11416 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
RaraP11416 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 83.8 ms