Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm31256-201ENSMUST00000194705 506 ntBASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm19931-201ENSMUST00000198920 368 ntBASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm8099-201ENSMUST00000200510 742 ntBASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim54Q9ERP3 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm11531-201ENSMUST00000117614 555 ntBASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm12715-201ENSMUST00000121430 1128 ntBASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm16570-201ENSMUST00000161951 436 ntBASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm2546-201ENSMUST00000182630 991 ntBASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim54Q9ERP3 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Mir874-201ENSMUST00000104769 76 ntBASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Gm5950-201ENSMUST00000213337 772 ntBASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
Trim54Q9ERP3 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.9□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms