Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.13□□□□□ -0.47
Clrn1Q8K445 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Clrn1Q8K445 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Gm12390-201ENSMUST00000117897 397 ntBASIC12.12□□□□□ -0.47
Clrn1Q8K445 Gm17150-201ENSMUST00000165577 381 ntBASIC12.12□□□□□ -0.47
Clrn1Q8K445 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.12□□□□□ -0.47
Clrn1Q8K445 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 AC138604.1-201ENSMUST00000226969 739 ntBASIC12.12□□□□□ -0.47
Clrn1Q8K445 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Clrn1Q8K445 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.11□□□□□ -0.47
Clrn1Q8K445 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Clrn1Q8K445 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC12.11□□□□□ -0.47
Clrn1Q8K445 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.11□□□□□ -0.47
Clrn1Q8K445 Gm11637-201ENSMUST00000120601 592 ntBASIC12.11□□□□□ -0.47
Clrn1Q8K445 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms