Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim56Q80VI1 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm43045-201ENSMUST00000198725 2095 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm42840-201ENSMUST00000200303 2251 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm29396-201ENSMUST00000185659 716 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm42627-201ENSMUST00000197347 224 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm6007-201ENSMUST00000208170 823 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm10608-202ENSMUST00000213924 676 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm22058-201ENSMUST00000083393 310 ntBASIC15.13■□□□□ 0.01
Trim56Q80VI1 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim56Q80VI1 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Gm11964-201ENSMUST00000120982 444 ntBASIC15.12■□□□□ 0.01
Trim56Q80VI1 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 AC167013.1-201ENSMUST00000228592 202 ntBASIC15.12■□□□□ 0.01
Trim56Q80VI1 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Gm43823-201ENSMUST00000197391 1808 ntBASIC15.12■□□□□ 0.01
Trim56Q80VI1 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim56Q80VI1 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Gm18222-201ENSMUST00000202416 1387 ntBASIC15.11■□□□□ 0.01
Trim56Q80VI1 Gm6210-201ENSMUST00000204734 1942 ntBASIC15.11■□□□□ 0.01
Trim56Q80VI1 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 AC159896.2-201ENSMUST00000214753 269 ntBASIC15.11■□□□□ 0.01
Trim56Q80VI1 AC154319.1-201ENSMUST00000216330 312 ntBASIC15.11■□□□□ 0.01
Trim56Q80VI1 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 AL589735.1-201ENSMUST00000224353 270 ntBASIC15.11■□□□□ 0.01
Trim56Q80VI1 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim56Q80VI1 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms