Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Gm26308-201ENSMUST00000157768 69 ntBASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Gm27702-201ENSMUST00000184512 56 ntBASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Gm27772-201ENSMUST00000184900 187 ntBASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim40Q3UWA4 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Gm43721-201ENSMUST00000199677 2313 ntBASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Gm15240-201ENSMUST00000118156 720 ntBASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 AC154767.3-201ENSMUST00000225150 1342 ntBASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim40Q3UWA4 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm5780-201ENSMUST00000217774 1834 ntBASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm14701-201ENSMUST00000117156 348 ntBASIC12.04□□□□□ -0.48
Trim40Q3UWA4 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim40Q3UWA4 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms