Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Upf3aQ3ULJ3 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gm27023-201ENSMUST00000182372 285 ntBASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gm8385-201ENSMUST00000058999 643 ntBASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gm10312-201ENSMUST00000078515 489 ntBASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3aQ3ULJ3 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm24845-201ENSMUST00000158034 109 ntBASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm28450-201ENSMUST00000187349 638 ntBASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm45691-201ENSMUST00000206905 1120 ntBASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm45495-201ENSMUST00000200940 1700 ntBASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC13.49□□□□□ -0.25
Upf3aQ3ULJ3 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Gm14999-201ENSMUST00000121039 624 ntBASIC13.48□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms