Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Mir686-201ENSMUST00000102174 109 ntBASIC15.13■□□□□ 0.01
Limch1Q3UH68 Gm1335-201ENSMUST00000121653 386 ntBASIC15.13■□□□□ 0.01
Limch1Q3UH68 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Gm4271-201ENSMUST00000174444 973 ntBASIC15.13■□□□□ 0.01
Limch1Q3UH68 Gm27194-201ENSMUST00000175753 2936 ntBASIC15.13■□□□□ 0.01
Limch1Q3UH68 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC15.13■□□□□ 0.01
Limch1Q3UH68 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Ntrk2-204ENSMUST00000224259 3049 ntBASIC15.13■□□□□ 0.01
Limch1Q3UH68 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Limch1Q3UH68 Gm26616-202ENSMUST00000195676 3107 ntBASIC15.12■□□□□ 0.01
Limch1Q3UH68 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Gm44094-201ENSMUST00000204703 2030 ntBASIC15.12■□□□□ 0.01
Limch1Q3UH68 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Gm27682-201ENSMUST00000183930 110 ntBASIC15.12■□□□□ 0.01
Limch1Q3UH68 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC15.12■□□□□ 0.01
Limch1Q3UH68 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Limch1Q3UH68 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Gm38385-201ENSMUST00000194454 2351 ntBASIC15.11■□□□□ 0.01
Limch1Q3UH68 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Gm6458-201ENSMUST00000211573 635 ntBASIC15.11■□□□□ 0.01
Limch1Q3UH68 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Gm9823-201ENSMUST00000051212 327 ntBASIC15.11■□□□□ 0.01
Limch1Q3UH68 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 AC101945.2-201ENSMUST00000227886 1377 ntBASIC15.11■□□□□ 0.01
Limch1Q3UH68 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Limch1Q3UH68 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC15.1■□□□□ 0.01
Limch1Q3UH68 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Limch1Q3UH68 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Limch1Q3UH68 Gm43045-201ENSMUST00000198725 2095 ntBASIC15.1■□□□□ 0.01
Limch1Q3UH68 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Limch1Q3UH68 Zkscan3-207ENSMUST00000223831 2101 ntBASIC15.1■□□□□ 0.01
Limch1Q3UH68 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Limch1Q3UH68 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Limch1Q3UH68 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms