Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm21998-201ENSMUST00000117552 1308 ntBASIC12.77□□□□□ -0.37
Col9a1Q05722 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Col9a1Q05722 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Olfr1428-202ENSMUST00000208391 1368 ntTSL 3 BASIC12.77□□□□□ -0.37
Col9a1Q05722 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Gm15784-201ENSMUST00000120260 1462 ntBASIC12.77□□□□□ -0.37
Col9a1Q05722 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a1Q05722 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Ighv7-1-201ENSMUST00000103474 363 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm7350-201ENSMUST00000120964 636 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Defa-ps17-201ENSMUST00000121849 171 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm8584-201ENSMUST00000171982 758 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Prl5a1-201ENSMUST00000017208 1061 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm23771-201ENSMUST00000178702 110 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm38283-201ENSMUST00000193041 695 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm37005-201ENSMUST00000193281 1164 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm37853-201ENSMUST00000195748 660 ntTSL 3 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Mir7686-201ENSMUST00000200604 57 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.76□□□□□ -0.37
Col9a1Q05722 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 4930407I19Rik-201ENSMUST00000220265 923 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm7441-201ENSMUST00000220697 1074 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 AC164597.2-201ENSMUST00000226738 603 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Olfr1039-201ENSMUST00000099910 960 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm12022-201ENSMUST00000143311 1340 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col9a1Q05722 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Gm20632-201ENSMUST00000176760 2427 ntBASIC12.76□□□□□ -0.37
Col9a1Q05722 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a1Q05722 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC12.75□□□□□ -0.37
Col9a1Q05722 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC12.75□□□□□ -0.37
Col9a1Q05722 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Col9a1Q05722 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 B4galt4-203ENSMUST00000114710 837 ntTSL 3 BASIC12.75□□□□□ -0.37
Col9a1Q05722 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 Gm13937-201ENSMUST00000121000 988 ntBASIC12.75□□□□□ -0.37
Col9a1Q05722 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC12.75□□□□□ -0.37
Col9a1Q05722 Gm22094-201ENSMUST00000158976 117 ntBASIC12.75□□□□□ -0.37
Col9a1Q05722 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 Gm3573-201ENSMUST00000168673 898 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Col9a1Q05722 Gm3486-201ENSMUST00000169361 883 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 Gm4181-201ENSMUST00000170249 898 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col9a1Q05722 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Col9a1Q05722 Matr3-216ENSMUST00000190653 1846 ntTSL 5 BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms