Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC10.97□□□□□ -0.65
Col8a1Q00780 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm5597-201ENSMUST00000182353 1193 ntBASIC10.97□□□□□ -0.65
Col8a1Q00780 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm3096-201ENSMUST00000185770 364 ntBASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm8885-201ENSMUST00000189382 598 ntBASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm9555-201ENSMUST00000200908 583 ntBASIC10.97□□□□□ -0.65
Col8a1Q00780 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Col8a1Q00780 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Col8a1Q00780 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Gm38157-201ENSMUST00000194178 1698 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Gm43908-201ENSMUST00000205074 1472 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Gm44775-201ENSMUST00000207266 1456 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Gm15131-201ENSMUST00000119124 595 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Gm16397-201ENSMUST00000122201 494 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Gm8584-201ENSMUST00000171982 758 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC10.96□□□□□ -0.65
Col8a1Q00780 Gm7003-201ENSMUST00000195089 312 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 AC122305.4-201ENSMUST00000216159 1206 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Spcs1-203ENSMUST00000226374 592 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 AC113031.8-201ENSMUST00000227856 631 ntBASIC10.96□□□□□ -0.65
Col8a1Q00780 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Col8a1Q00780 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Matn2-206ENSMUST00000228570 2798 ntBASIC10.96□□□□□ -0.66
Col8a1Q00780 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
Col8a1Q00780 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Gm43570-201ENSMUST00000199951 3688 ntBASIC10.96□□□□□ -0.66
Col8a1Q00780 Gm38197-201ENSMUST00000192320 2122 ntBASIC10.96□□□□□ -0.66
Col8a1Q00780 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Col8a1Q00780 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Col8a1Q00780 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms