Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.74□□□□□ -0.53
Scn1bP97952 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Gm15770-201ENSMUST00000117498 584 ntBASIC11.74□□□□□ -0.53
Scn1bP97952 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC11.74□□□□□ -0.53
Scn1bP97952 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Gm27702-201ENSMUST00000184512 56 ntBASIC11.74□□□□□ -0.53
Scn1bP97952 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC11.74□□□□□ -0.53
Scn1bP97952 Gm10253-201ENSMUST00000194270 940 ntBASIC11.74□□□□□ -0.53
Scn1bP97952 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC11.74□□□□□ -0.53
Scn1bP97952 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC11.74□□□□□ -0.53
Scn1bP97952 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
Scn1bP97952 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.74□□□□□ -0.53
Scn1bP97952 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Scn1bP97952 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Scn1bP97952 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC11.73□□□□□ -0.53
Scn1bP97952 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Gm6415-201ENSMUST00000118488 348 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Gm9025-201ENSMUST00000122415 1575 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Mir1897-201ENSMUST00000122581 272 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC11.73□□□□□ -0.53
Scn1bP97952 Gm29541-201ENSMUST00000191351 678 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Gm6916-202ENSMUST00000205523 195 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Gm5053-201ENSMUST00000208361 1678 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 AC160410.1-201ENSMUST00000219298 1972 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Chchd1-203ENSMUST00000224633 557 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 AC113060.1-201ENSMUST00000225689 1573 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Arhgef3-204ENSMUST00000225949 3198 ntBASIC11.73□□□□□ -0.53
Scn1bP97952 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Scn1bP97952 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Scn1bP97952 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.72□□□□□ -0.53
Scn1bP97952 Gm45011-201ENSMUST00000207620 2297 ntBASIC11.72□□□□□ -0.53
Scn1bP97952 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Scn1bP97952 Gm42943-201ENSMUST00000199676 3242 ntBASIC11.72□□□□□ -0.53
Scn1bP97952 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Scn1bP97952 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
Scn1bP97952 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms