Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
Lig3P97386 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.07□□□□□ -0.16
Lig3P97386 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC14.07□□□□□ -0.16
Lig3P97386 Gm12997-201ENSMUST00000120207 640 ntBASIC14.07□□□□□ -0.16
Lig3P97386 Gm14381-201ENSMUST00000122105 414 ntBASIC14.07□□□□□ -0.16
Lig3P97386 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.07□□□□□ -0.16
Lig3P97386 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC14.07□□□□□ -0.16
Lig3P97386 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC14.07□□□□□ -0.16
Lig3P97386 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Lig3P97386 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.07□□□□□ -0.16
Lig3P97386 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC14.07□□□□□ -0.16
Lig3P97386 AC164426.2-201ENSMUST00000225993 2492 ntBASIC14.07□□□□□ -0.16
Lig3P97386 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lig3P97386 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Lig3P97386 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Lig3P97386 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC14.06□□□□□ -0.16
Lig3P97386 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Lig3P97386 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.06□□□□□ -0.16
Lig3P97386 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.06□□□□□ -0.16
Lig3P97386 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC14.06□□□□□ -0.16
Lig3P97386 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.06□□□□□ -0.16
Lig3P97386 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.06□□□□□ -0.16
Lig3P97386 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Lig3P97386 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lig3P97386 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.06□□□□□ -0.16
Lig3P97386 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Lig3P97386 Gm18263-201ENSMUST00000220846 1928 ntBASIC14.05□□□□□ -0.16
Lig3P97386 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Lig3P97386 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Lig3P97386 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC14.05□□□□□ -0.16
Lig3P97386 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.05□□□□□ -0.16
Lig3P97386 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC14.05□□□□□ -0.16
Lig3P97386 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.05□□□□□ -0.16
Lig3P97386 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Lig3P97386 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Lig3P97386 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Lig3P97386 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lig3P97386 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Gm45053-201ENSMUST00000206112 2499 ntBASIC14.04□□□□□ -0.16
Lig3P97386 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lig3P97386 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms