Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Rfx1P48377 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
Rfx1P48377 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Rfx1P48377 Gm27306-201ENSMUST00000183970 107 ntBASIC15.34■□□□□ 0.05
Rfx1P48377 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.34■□□□□ 0.05
Rfx1P48377 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Gm44985-201ENSMUST00000206202 1016 ntBASIC15.34■□□□□ 0.05
Rfx1P48377 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.34■□□□□ 0.05
Rfx1P48377 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC15.34■□□□□ 0.05
Rfx1P48377 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Rfx1P48377 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.34■□□□□ 0.05
Rfx1P48377 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Rfx1P48377 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC15.34■□□□□ 0.05
Rfx1P48377 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC15.34■□□□□ 0.05
Rfx1P48377 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Rfx1P48377 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Rfx1P48377 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Rfx1P48377 Mypopos-202ENSMUST00000205975 2321 ntBASIC15.33■□□□□ 0.05
Rfx1P48377 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Rfx1P48377 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Rfx1P48377 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Rfx1P48377 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC15.33■□□□□ 0.04
Rfx1P48377 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC15.33■□□□□ 0.04
Rfx1P48377 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Gm13689-201ENSMUST00000119360 685 ntBASIC15.33■□□□□ 0.04
Rfx1P48377 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC15.33■□□□□ 0.04
Rfx1P48377 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Rfx1P48377 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
Rfx1P48377 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 AC138604.1-201ENSMUST00000226969 739 ntBASIC15.33■□□□□ 0.04
Rfx1P48377 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Rfx1P48377 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Rfx1P48377 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC15.33■□□□□ 0.04
Rfx1P48377 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Gm18263-201ENSMUST00000220846 1928 ntBASIC15.33■□□□□ 0.04
Rfx1P48377 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Rfx1P48377 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC15.33■□□□□ 0.04
Rfx1P48377 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Rfx1P48377 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Rfx1P48377 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Rfx1P48377 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC15.32■□□□□ 0.04
Rfx1P48377 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC15.32■□□□□ 0.04
Rfx1P48377 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.32■□□□□ 0.04
Rfx1P48377 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.32■□□□□ 0.04
Rfx1P48377 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Gm15823-201ENSMUST00000064305 670 ntBASIC15.32■□□□□ 0.04
Rfx1P48377 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Rfx1P48377 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Rfx1P48377 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Gm43721-201ENSMUST00000199677 2313 ntBASIC15.32■□□□□ 0.04
Rfx1P48377 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Rfx1P48377 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Abhd6-203ENSMUST00000225234 1958 ntBASIC15.31■□□□□ 0.04
Rfx1P48377 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Rfx1P48377 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC15.31■□□□□ 0.04
Rfx1P48377 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC15.31■□□□□ 0.04
Rfx1P48377 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Gm37171-201ENSMUST00000192636 1185 ntBASIC15.31■□□□□ 0.04
Rfx1P48377 AC192088.1-201ENSMUST00000227561 301 ntBASIC15.31■□□□□ 0.04
Rfx1P48377 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Gm9755-201ENSMUST00000032981 1356 ntBASIC15.31■□□□□ 0.04
Rfx1P48377 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Rfx1P48377 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 70.9 ms