Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Cdx2P43241 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cdx2P43241 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.18□□□□□ -0.46
Cdx2P43241 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC12.18□□□□□ -0.46
Cdx2P43241 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm12286-201ENSMUST00000119246 1002 ntBASIC12.18□□□□□ -0.46
Cdx2P43241 n-R5s14-201ENSMUST00000122688 107 ntBASIC12.18□□□□□ -0.46
Cdx2P43241 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC12.18□□□□□ -0.46
Cdx2P43241 Mir1943-201ENSMUST00000158276 73 ntBASIC12.18□□□□□ -0.46
Cdx2P43241 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Cdx2P43241 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm45118-201ENSMUST00000208928 825 ntBASIC12.18□□□□□ -0.46
Cdx2P43241 AC165260.3-202ENSMUST00000224550 1031 ntBASIC12.18□□□□□ -0.46
Cdx2P43241 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.18□□□□□ -0.46
Cdx2P43241 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdx2P43241 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cdx2P43241 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm43134-201ENSMUST00000199434 1886 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Cdx2P43241 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC12.17□□□□□ -0.46
Cdx2P43241 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.17□□□□□ -0.46
Cdx2P43241 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Cdx2P43241 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm32999-201ENSMUST00000192693 562 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Gm17812-201ENSMUST00000204935 318 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Gm18730-201ENSMUST00000218038 343 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Gm14267-206ENSMUST00000226870 1209 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
Cdx2P43241 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Gm5639-201ENSMUST00000122305 2403 ntBASIC12.17□□□□□ -0.46
Cdx2P43241 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdx2P43241 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Cdx2P43241 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC12.17□□□□□ -0.46
Cdx2P43241 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms