Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
RaraP11416 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC13.88□□□□□ -0.19
RaraP11416 Gm8805-201ENSMUST00000117848 313 ntBASIC13.88□□□□□ -0.19
RaraP11416 Gm12539-201ENSMUST00000121549 1098 ntBASIC13.88□□□□□ -0.19
RaraP11416 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC13.88□□□□□ -0.19
RaraP11416 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC13.88□□□□□ -0.19
RaraP11416 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.88□□□□□ -0.19
RaraP11416 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
RaraP11416 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RaraP11416 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC13.88□□□□□ -0.19
RaraP11416 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Gm37269-201ENSMUST00000193906 1891 ntBASIC13.87□□□□□ -0.19
RaraP11416 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.87□□□□□ -0.19
RaraP11416 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
RaraP11416 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
RaraP11416 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.87□□□□□ -0.19
RaraP11416 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC13.87□□□□□ -0.19
RaraP11416 AC135669.1-201ENSMUST00000213585 412 ntBASIC13.87□□□□□ -0.19
RaraP11416 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC13.87□□□□□ -0.19
RaraP11416 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC13.87□□□□□ -0.19
RaraP11416 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
RaraP11416 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
RaraP11416 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 AC164702.1-201ENSMUST00000220135 2212 ntBASIC13.87□□□□□ -0.19
RaraP11416 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
RaraP11416 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RaraP11416 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.87□□□□□ -0.19
RaraP11416 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.87□□□□□ -0.19
RaraP11416 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
RaraP11416 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
RaraP11416 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC13.86□□□□□ -0.19
RaraP11416 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC13.86□□□□□ -0.19
RaraP11416 Gm8598-201ENSMUST00000221184 836 ntBASIC13.86□□□□□ -0.19
RaraP11416 AC125117.1-201ENSMUST00000228121 468 ntBASIC13.86□□□□□ -0.19
RaraP11416 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC13.86□□□□□ -0.19
RaraP11416 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RaraP11416 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms