Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC12.53□□□□□ -0.4
Clip3B9EHT4 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm16202-201ENSMUST00000117532 544 ntBASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm12384-201ENSMUST00000119228 919 ntBASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm16177-201ENSMUST00000120728 718 ntBASIC12.53□□□□□ -0.4
Clip3B9EHT4 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.53□□□□□ -0.4
Clip3B9EHT4 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 AC124577.2-201ENSMUST00000217413 2420 ntBASIC12.53□□□□□ -0.4
Clip3B9EHT4 Gm9200-201ENSMUST00000118513 1354 ntBASIC12.53□□□□□ -0.4
Clip3B9EHT4 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC12.53□□□□□ -0.4
Clip3B9EHT4 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clip3B9EHT4 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Gm8805-201ENSMUST00000117848 313 ntBASIC12.52□□□□□ -0.41
Clip3B9EHT4 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.52□□□□□ -0.41
Clip3B9EHT4 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 AC134254.1-201ENSMUST00000221362 167 ntBASIC12.52□□□□□ -0.41
Clip3B9EHT4 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.52□□□□□ -0.41
Clip3B9EHT4 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Clip3B9EHT4 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clip3B9EHT4 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clip3B9EHT4 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Clip3B9EHT4 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clip3B9EHT4 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Clip3B9EHT4 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Clip3B9EHT4 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms