Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm13813-201ENSMUST00000120998 787 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm10156-201ENSMUST00000122364 462 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm9124-201ENSMUST00000191789 1092 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm9113-201ENSMUST00000192510 1018 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Ighv5-13-201ENSMUST00000193550 290 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm9131-201ENSMUST00000193557 1089 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm9121-201ENSMUST00000193749 1071 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Gm6745-201ENSMUST00000199216 526 ntBASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim11Q99PQ2 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Gm5638-201ENSMUST00000118618 1258 ntBASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 CT030657.3-201ENSMUST00000222707 1200 ntBASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim11Q99PQ2 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Gm13123-201ENSMUST00000122173 492 ntBASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Gm37922-201ENSMUST00000195596 455 ntBASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.65□□□□□ -0.06
Trim11Q99PQ2 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms