Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Gm8213-201ENSMUST00000118191 441 ntBASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Gm7783-201ENSMUST00000204795 781 ntBASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ushbp1Q8R370 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm15236-201ENSMUST00000117309 379 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm4857-201ENSMUST00000192718 785 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm17823-201ENSMUST00000217830 1006 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Gm3052-202ENSMUST00000188254 2224 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 AC101945.2-201ENSMUST00000227886 1377 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 AC241621.2-201ENSMUST00000223991 2151 ntBASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ushbp1Q8R370 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Gm44094-201ENSMUST00000204703 2030 ntBASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Gm4271-201ENSMUST00000174444 973 ntBASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms