Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Gm11439-201ENSMUST00000118598 409 ntBASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Gm14832-201ENSMUST00000121289 322 ntBASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Gm18212-201ENSMUST00000211678 889 ntBASIC17.59■□□□□ 0.41
Usp40Q8BWR4 AC125209.1-201ENSMUST00000225812 766 ntBASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Usp40Q8BWR4 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Usp40Q8BWR4 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Usp40Q8BWR4 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Usp40Q8BWR4 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Gm14208-201ENSMUST00000119645 678 ntBASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Gm5863-201ENSMUST00000121760 1008 ntBASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Gm27023-201ENSMUST00000182372 285 ntBASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Gstp-ps-201ENSMUST00000195526 631 ntBASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Gm44262-201ENSMUST00000204969 372 ntBASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 AC154222.2-201ENSMUST00000225848 607 ntBASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Gm44065-201ENSMUST00000203184 3527 ntBASIC17.58■□□□□ 0.4
Usp40Q8BWR4 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Crry-ps-201ENSMUST00000079090 1309 ntBASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Gm14028-201ENSMUST00000117434 479 ntBASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Gm26361-201ENSMUST00000158868 186 ntBASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Gm9445-201ENSMUST00000207454 1285 ntBASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Usp40Q8BWR4 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp40Q8BWR4 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp40Q8BWR4 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp40Q8BWR4 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp40Q8BWR4 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp40Q8BWR4 Gm8617-201ENSMUST00000118796 2222 ntBASIC17.56■□□□□ 0.4
Usp40Q8BWR4 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp40Q8BWR4 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms