Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3bQ3ULL6 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3bQ3ULL6 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Upf3bQ3ULL6 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3bQ3ULL6 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Upf3bQ3ULL6 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC13.8□□□□□ -0.2
Upf3bQ3ULL6 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Upf3bQ3ULL6 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Gm13226-201ENSMUST00000117838 404 ntBASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Mir1982-201ENSMUST00000157368 74 ntBASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Upf3bQ3ULL6 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gm14660-201ENSMUST00000119809 575 ntBASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 AC166051.1-201ENSMUST00000214313 210 ntBASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Upf3bQ3ULL6 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Upf3bQ3ULL6 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Upf3bQ3ULL6 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.77□□□□□ -0.2
Upf3bQ3ULL6 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Upf3bQ3ULL6 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gm14704-201ENSMUST00000120300 874 ntBASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gm12291-201ENSMUST00000121627 311 ntBASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Tyms-ps-201ENSMUST00000219550 915 ntBASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms