Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Gm12846-201ENSMUST00000120431 1373 ntBASIC15.17■□□□□ 0.02
Limch1Q3UH68 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC15.17■□□□□ 0.02
Limch1Q3UH68 AC093022.5-201ENSMUST00000226841 1079 ntBASIC15.17■□□□□ 0.02
Limch1Q3UH68 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.16■□□□□ 0.02
Limch1Q3UH68 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC15.16■□□□□ 0.02
Limch1Q3UH68 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Gm28323-201ENSMUST00000186817 2499 ntBASIC15.16■□□□□ 0.02
Limch1Q3UH68 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Limch1Q3UH68 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm38297-201ENSMUST00000195122 1057 ntBASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm45880-201ENSMUST00000213041 853 ntBASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm7172-201ENSMUST00000218047 1152 ntBASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm16372-201ENSMUST00000073088 450 ntBASIC15.15■□□□□ 0.02
Limch1Q3UH68 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm10339-203ENSMUST00000225409 1671 ntBASIC15.15■□□□□ 0.02
Limch1Q3UH68 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.15■□□□□ 0.02
Limch1Q3UH68 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Limch1Q3UH68 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gm12203-201ENSMUST00000118235 598 ntBASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gm12209-201ENSMUST00000120089 596 ntBASIC15.14■□□□□ 0.01
Limch1Q3UH68 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC15.14■□□□□ 0.01
Limch1Q3UH68 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gm19184-201ENSMUST00000196798 928 ntBASIC15.14■□□□□ 0.01
Limch1Q3UH68 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Gm19309-201ENSMUST00000218295 205 ntBASIC15.14■□□□□ 0.01
Limch1Q3UH68 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Limch1Q3UH68 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms