Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col18a1P39061 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Col18a1P39061 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm15207-201ENSMUST00000119259 442 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Gm14247-201ENSMUST00000120950 237 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC16.61■□□□□ 0.25
Col18a1P39061 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm44056-201ENSMUST00000204623 1427 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm5641-201ENSMUST00000091130 1488 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm13019-201ENSMUST00000120000 276 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC16.61■□□□□ 0.25
Col18a1P39061 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC16.61■□□□□ 0.25
Col18a1P39061 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm18711-201ENSMUST00000199341 750 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Gm43275-201ENSMUST00000202053 1020 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Gm3726-201ENSMUST00000203110 785 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 Gm8342-201ENSMUST00000209839 757 ntBASIC16.61■□□□□ 0.25
Col18a1P39061 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC16.61■□□□□ 0.25
Col18a1P39061 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Col18a1P39061 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col18a1P39061 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
Col18a1P39061 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col18a1P39061 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.6■□□□□ 0.25
Col18a1P39061 AC154671.1-201ENSMUST00000228617 1578 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Col18a1P39061 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col18a1P39061 Gm23272-201ENSMUST00000104053 129 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 Gm15003-201ENSMUST00000118884 446 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 Gm14760-201ENSMUST00000121831 999 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC16.6■□□□□ 0.25
Col18a1P39061 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC16.6■□□□□ 0.25
Col18a1P39061 Gm20414-201ENSMUST00000172918 646 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC16.6■□□□□ 0.25
Col18a1P39061 AC129308.3-201ENSMUST00000225652 524 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 AC165154.1-201ENSMUST00000226661 340 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 CT573086.4-201ENSMUST00000226729 342 ntBASIC16.6■□□□□ 0.25
Col18a1P39061 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC16.6■□□□□ 0.25
Col18a1P39061 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
Col18a1P39061 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC16.6■□□□□ 0.25
Col18a1P39061 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col18a1P39061 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col18a1P39061 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col18a1P39061 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC16.59■□□□□ 0.25
Col18a1P39061 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 AC173482.6-201ENSMUST00000225889 1741 ntBASIC16.59■□□□□ 0.25
Col18a1P39061 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col18a1P39061 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col18a1P39061 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col18a1P39061 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col18a1P39061 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC16.59■□□□□ 0.25
Col18a1P39061 Gm25604-201ENSMUST00000158359 133 ntBASIC16.59■□□□□ 0.25
Col18a1P39061 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col18a1P39061 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col18a1P39061 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col18a1P39061 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col18a1P39061 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col18a1P39061 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Col18a1P39061 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Gm26134-201ENSMUST00000178484 110 ntBASIC16.58■□□□□ 0.24
Col18a1P39061 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Gm5340-201ENSMUST00000203733 880 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms