Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC13.91□□□□□ -0.18
RaraP11416 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Gm8463-201ENSMUST00000208573 613 ntBASIC13.91□□□□□ -0.18
RaraP11416 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
RaraP11416 Gm45668-201ENSMUST00000211271 493 ntBASIC13.91□□□□□ -0.18
RaraP11416 AC166051.1-201ENSMUST00000214313 210 ntBASIC13.91□□□□□ -0.18
RaraP11416 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.91□□□□□ -0.18
RaraP11416 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC13.91□□□□□ -0.18
RaraP11416 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 AL645783.1-201ENSMUST00000221416 1832 ntBASIC13.91□□□□□ -0.18
RaraP11416 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.91□□□□□ -0.18
RaraP11416 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.91□□□□□ -0.18
RaraP11416 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
RaraP11416 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RaraP11416 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.9□□□□□ -0.18
RaraP11416 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
RaraP11416 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
RaraP11416 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC13.9□□□□□ -0.18
RaraP11416 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Gm10576-201ENSMUST00000191927 825 ntBASIC13.9□□□□□ -0.18
RaraP11416 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC13.9□□□□□ -0.18
RaraP11416 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.9□□□□□ -0.18
RaraP11416 Gm5626-201ENSMUST00000222151 1058 ntBASIC13.9□□□□□ -0.18
RaraP11416 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Gm16372-201ENSMUST00000073088 450 ntBASIC13.9□□□□□ -0.18
RaraP11416 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
RaraP11416 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 CT009713.10-201ENSMUST00000225013 1986 ntBASIC13.9□□□□□ -0.18
RaraP11416 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
RaraP11416 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC13.9□□□□□ -0.18
RaraP11416 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.9□□□□□ -0.18
RaraP11416 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RaraP11416 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.19
RaraP11416 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
RaraP11416 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC13.89□□□□□ -0.19
RaraP11416 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
RaraP11416 Gm12291-201ENSMUST00000121627 311 ntBASIC13.89□□□□□ -0.19
RaraP11416 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
RaraP11416 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
RaraP11416 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Mir6977-201ENSMUST00000184960 64 ntBASIC13.89□□□□□ -0.19
RaraP11416 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC13.89□□□□□ -0.19
RaraP11416 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC13.89□□□□□ -0.19
RaraP11416 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC13.89□□□□□ -0.19
RaraP11416 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC13.89□□□□□ -0.19
RaraP11416 Gm44711-201ENSMUST00000205414 1264 ntBASIC13.89□□□□□ -0.19
RaraP11416 AC159006.1-201ENSMUST00000226396 258 ntBASIC13.89□□□□□ -0.19
RaraP11416 AC155252.1-201ENSMUST00000226462 1208 ntBASIC13.89□□□□□ -0.19
RaraP11416 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Gm5912-201ENSMUST00000122282 1438 ntBASIC13.89□□□□□ -0.19
RaraP11416 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RaraP11416 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms