Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.19■□□□□ 0.02
Col3a1P08121 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Col3a1P08121 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.19■□□□□ 0.02
Col3a1P08121 Gm5884-201ENSMUST00000036712 1479 ntBASIC15.19■□□□□ 0.02
Col3a1P08121 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Col3a1P08121 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC15.19■□□□□ 0.02
Col3a1P08121 Gm12201-201ENSMUST00000120657 1234 ntBASIC15.19■□□□□ 0.02
Col3a1P08121 Gm14277-201ENSMUST00000121195 360 ntBASIC15.19■□□□□ 0.02
Col3a1P08121 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Gm24514-201ENSMUST00000174961 285 ntBASIC15.19■□□□□ 0.02
Col3a1P08121 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC15.19■□□□□ 0.02
Col3a1P08121 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Col3a1P08121 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col3a1P08121 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Col3a1P08121 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC15.18■□□□□ 0.02
Col3a1P08121 Gm12566-201ENSMUST00000121479 359 ntBASIC15.18■□□□□ 0.02
Col3a1P08121 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Col3a1P08121 Gm42863-201ENSMUST00000197875 2958 ntBASIC15.18■□□□□ 0.02
Col3a1P08121 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Gm45643-201ENSMUST00000211364 1484 ntBASIC15.18■□□□□ 0.02
Col3a1P08121 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col3a1P08121 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col3a1P08121 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC15.17■□□□□ 0.02
Col3a1P08121 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC15.17■□□□□ 0.02
Col3a1P08121 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Gm9083-201ENSMUST00000120423 819 ntBASIC15.17■□□□□ 0.02
Col3a1P08121 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC15.17■□□□□ 0.02
Col3a1P08121 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC15.17■□□□□ 0.02
Col3a1P08121 Gm5616-201ENSMUST00000165252 384 ntBASIC15.17■□□□□ 0.02
Col3a1P08121 Gm8741-201ENSMUST00000174736 384 ntBASIC15.17■□□□□ 0.02
Col3a1P08121 Mir6927-201ENSMUST00000184494 71 ntBASIC15.17■□□□□ 0.02
Col3a1P08121 Gm9230-201ENSMUST00000188228 532 ntBASIC15.17■□□□□ 0.02
Col3a1P08121 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Col3a1P08121 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC15.17■□□□□ 0.02
Col3a1P08121 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
Col3a1P08121 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC15.17■□□□□ 0.02
Col3a1P08121 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
Col3a1P08121 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col3a1P08121 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 75.6 ms