Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Mir874-201ENSMUST00000104769 76 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm13829-201ENSMUST00000119600 138 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm8652-201ENSMUST00000181363 964 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm45841-201ENSMUST00000207700 164 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Itm2b-204ENSMUST00000228637 783 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm10012-201ENSMUST00000078252 192 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
Trim3Q9R1R2 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm6266-201ENSMUST00000203844 806 ntBASIC12.15□□□□□ -0.46
Trim3Q9R1R2 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Trim3Q9R1R2 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Trim3Q9R1R2 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms