Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 C1qtnf7-202ENSMUST00000121872 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm14717-201ENSMUST00000140450 649 ntTSL 3 BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm4462-201ENSMUST00000166453 492 ntBASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm7238-201ENSMUST00000206467 973 ntBASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm2448-201ENSMUST00000207080 559 ntBASIC17.08■□□□□ 0.33
Scn4aQ9ER60 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn4aQ9ER60 Gm4782-201ENSMUST00000168705 2046 ntBASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Gm21759-201ENSMUST00000178345 1828 ntBASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC17.08■□□□□ 0.32
Scn4aQ9ER60 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm5380-201ENSMUST00000119296 2136 ntBASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm17796-201ENSMUST00000189015 1213 ntBASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn4aQ9ER60 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Gm44891-201ENSMUST00000208817 2223 ntBASIC17.06■□□□□ 0.32
Scn4aQ9ER60 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn4aQ9ER60 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms