Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gm2423-201ENSMUST00000074863 733 ntBASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gm5161-201ENSMUST00000075243 853 ntBASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gm13127-201ENSMUST00000118978 1389 ntBASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Ddx28Q9CWT6 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm11524-201ENSMUST00000119349 807 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm12485-201ENSMUST00000119641 291 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm26464-201ENSMUST00000157094 305 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm43094-201ENSMUST00000196549 921 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm37472-201ENSMUST00000192342 4052 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Ddx28Q9CWT6 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.1□□□□□ -0.47
Ddx28Q9CWT6 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms